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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
total RNA-seq
5
STARR-seq
4
ChIP-seq
2
Hi-C
1
ATAC-seq
1
whole genome sequencing assay
Assay category
10
Transcription
4
DNA binding
2
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
4
control
Date released
22
August, 2021
1
March, 2019
Available data
14
bed narrowPeak
bigWig
10
tsv
2
bedpe bed3+
2
hic
bedpe
1
vcf
Organism
23
Homo sapiens
Biosample type
20
cell line
3
tissue
Organ
17
liver
3
pancreas
2
kidney
Project
23
AMP
Genome assembly (visualization)
2
hg19
1
GRCh38
Lab
835
AMP-T2D consortium
229
Klaus Kaestner, Upenn
131
Katalin Susztak, Upenn
123
Kyle Gaulton, UCSD
23
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
1
Maike Sander, UCSD
Audit category:
1
inconsistent ontology term
assay_title!
single cell RNA-seq
files.file_type!
bedpe
bigWig
month_released!
October, 2019
BIOSAMPLE
ASSAY
23 results
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total RNA-seq
STARR-seq
ChIP-seq
Hi-C
ATAC-seq
whole genome sequencing assay
cell line
HepG2
9
2
4
1
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
1
1
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