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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
8
Transcription
6
3D chromatin structure
6
DNA methylation
2
DNA accessibility
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
26
August, 2017
10
July, 2019
10
June, 2019
7
May, 2019
5
March, 2020
2
February, 2020
1
January, 2018
1
May, 2022
Available data
68
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
62
Homo sapiens
Biosample type
49
tissue
13
primary cell
Organ
840
pancreas
631
connective tissue
472
adipose tissue
433
liver
425
epithelium
253
heart
245
brain
206
vasculature
204
blood vessel
202
kidney
159
bone element
130
artery
86
limb
62
musculature of body
56
eye
41
nerve
34
embryo
18
blood
18
bodily fluid
18
spleen
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
62
AMP
Genome assembly (visualization)
40
hg19
20
GRCh38
Lab
62
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
assay_title!
single cell RNA-seq
files.file_type!
bigBed broadPeak
lab.title!
Xin Sun, UCSD
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
62 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
muscle of leg
7
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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