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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
445
ChIP-seq
189
total RNA-seq
23
ATAC-seq
4
Hi-C
4
WGBS
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
DNase-seq
single cell RNA-seq
1
whole genome sequencing assay
Assay category
445
DNA binding
192
Transcription
24
DNA accessibility
6
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
245
transcription factor
108
control
89
histone modification
88
histone
66
recombinant protein
54
narrow histone mark
35
RNA binding protein
34
broad histone mark
14
chromatin remodeller
1
other context
1
other post-translational modification
Date released
257
November, 2017
194
May, 2020
63
December, 2017
54
August, 2017
November, 2018
40
May, 2022
35
August, 2021
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
March, 2020
2
February, 2021
1
December, 2018
1
February, 2020
Available data
628
bam
570
bigWig
412
fastq
390
bed narrowPeak
307
bigBed narrowPeak
174
tsv
86
tagAlign
60
bed broadPeak
bigBed broadPeak
10
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
hdf5
1
vcf
Organism
677
Homo sapiens
Biosample type
353
tissue
297
cell line
15
in vitro differentiated cells
12
primary cell
Organ
854
pancreas
677
liver
671
connective tissue
489
adipose tissue
432
epithelium
heart
245
brain
213
vasculature
212
kidney
211
blood vessel
159
bone element
135
artery
86
limb
62
musculature of body
57
eye
54
blood
54
bodily fluid
41
nerve
37
embryo
18
vein
16
skeleton
16
spleen
11
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
677
AMP
Genome assembly (visualization)
516
hg19
433
GRCh38
Lab
606
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
10
missing controlled_by
Audit category:
9
inconsistent control read length
4
inconsistent control run_type
assay_title!
single cell RNA-seq
files.file_type!
bigBed broadPeak
month_released!
November, 2018
organ_slims!
heart
BIOSAMPLE
ASSAY
677 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
small RNA-seq
RRBS
STARR-seq
DNase-seq
whole genome sequencing assay
tissue
liver
141
167
20
1
3
1
1
1
right lobe of liver
10
3
1
1
2
1
cell line
HepG2
275
14
1
2
2
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
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