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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
21
total RNA-seq
16
ATAC-seq
4
small RNA-seq
3
Hi-C
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
28
DNA binding
25
Transcription
17
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
histone
184
histone modification
114
narrow histone mark
70
broad histone mark
28
control
Date released
15
July, 2019
15
November, 2017
12
February, 2020
9
February, 2023
9
October, 2019
8
February, 2021
4
October, 2017
3
May, 2019
2
March, 2020
Available data
82
bam
53
bigWig
44
bed narrowPeak
36
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
bigBed broadPeak
23
tsv
19
tagAlign
11
fastq
5
bed bed3
4
txt
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
Organism
77
Homo sapiens
Biosample type
70
tissue
7
primary cell
Organ
708
pancreas
639
liver
593
connective tissue
457
adipose tissue
343
epithelium
182
kidney
173
heart
159
bone element
146
vasculature
144
blood vessel
115
artery
68
blood
68
bodily fluid
61
brain
54
eye
37
limb
29
musculature of body
25
embryo
18
spleen
17
nerve
16
skeleton
11
lung
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
77
AMP
Genome assembly (visualization)
31
hg19
19
GRCh38
Lab
77
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
single cell RNA-seq
files.file_type!
bigBed broadPeak
target.investigated_as!
histone
BIOSAMPLE
ASSAY
77 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
brain
3
1
1
1
cerebellum (Hemisphere)
2
1
1
1
frontal cortex
2
1
1
temporal lobe
2
1
1
caudate nucleus
2
1
+ See 34 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
brain pericyte
1
See all biosamples
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