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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
single cell RNA-seq
43
ATAC-seq
20
ChIP-seq
3
pCHi-C
3
total RNA-seq
2
RRBS
2
WGBS
Assay category
43
DNA accessibility
20
DNA binding
4
DNA methylation
3
Transcription
Target of assay
20
control
Date released
35
February, 2023
10
April, 2019
10
February, 2021
6
May, 2019
4
July, 2019
3
February, 2020
3
March, 2020
2
June, 2019
Available data
bigWig
211
bam
191
bed narrowPeak
94
bigBed narrowPeak
76
tsv
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
hic
Organism
73
Homo sapiens
Biosample type
60
tissue
10
cell line
3
primary cell
Organ
pancreas
217
epithelium
166
liver
158
kidney
114
connective tissue
101
bone element
73
heart
72
vasculature
71
blood vessel
66
adipose tissue
64
brain
55
eye
54
artery
31
limb
25
musculature of body
16
skeleton
14
blood
14
bodily fluid
12
nerve
11
lung
9
spleen
8
embryo
5
gonad
5
ovary
5
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
73
AMP
Genome assembly (visualization)
43
GRCh38
10
hg19
Lab
73
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_title!
single cell RNA-seq
files.file_type!
bigWig
hic
organ_slims!
pancreas
BIOSAMPLE
ASSAY
73 results
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ATAC-seq
ChIP-seq
pCHi-C
total RNA-seq
RRBS
WGBS
tissue
coronary artery
35
2
1
heart left ventricle
6
1
1
2
right atrium auricular region
3
1
heart right ventricle
2
1
heart
2
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
8
2
primary cell
cardiac fibroblast
2
1
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