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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
ChIP-seq
21
total RNA-seq
4
WGBS
3
pCHi-C
2
ATAC-seq
2
Hi-C
2
RRBS
1
DNase-seq
single cell RNA-seq
Assay category
115
DNA binding
21
Transcription
6
DNA methylation
3
DNA accessibility
2
3D chromatin structure
Target of assay
90
control
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
5
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
47
November, 2017
36
August, 2017
24
May, 2020
20
May, 2022
August, 2021
13
December, 2017
2
February, 2021
2
July, 2019
2
March, 2020
1
December, 2018
1
February, 2020
1
November, 2018
1
October, 2019
Available data
677
bam
bigWig
465
fastq
424
bed narrowPeak
358
bigBed narrowPeak
165
tsv
82
tagAlign
63
bed broadPeak
63
bigBed broadPeak
10
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
bedpe bed3+
1
hdf5
1
hic
Organism
150
Homo sapiens
Biosample type
95
tissue
52
cell line
2
primary cell
1
in vitro differentiated cells
Organ
314
pancreas
220
epithelium
150
liver
111
connective tissue
101
bone element
76
heart
75
vasculature
74
blood vessel
65
adipose tissue
64
brain
55
eye
54
artery
37
kidney
31
limb
27
musculature of body
16
skeleton
14
blood
14
bodily fluid
12
nerve
11
lung
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
150
AMP
Genome assembly (visualization)
7
hg19
3
GRCh38
Lab
130
AMP-T2D consortium
20
Karen Mohlke, UNC
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
assay_title!
single cell RNA-seq
files.file_type!
bigWig
month_released!
August, 2021
March, 2019
BIOSAMPLE
ASSAY
150 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
pCHi-C
ATAC-seq
Hi-C
RRBS
DNase-seq
tissue
liver
63
20
3
1
1
1
right lobe of liver
3
1
1
1
cell line
HepG2
48
2
1
1
primary cell
Liver fetal (hepatocyte)
1
hepatocyte
1
in vitro differentiated cells
hepatocyte
1
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