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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
total RNA-seq
45
ATAC-seq
34
ChIP-seq
2
DNase-seq
single cell RNA-seq
Assay category
55
Transcription
47
DNA accessibility
34
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
26
October, 2019
5
May, 2019
2
February, 2020
2
July, 2019
June, 2019
Available data
99
bam
82
bigWig
72
bed narrowPeak
55
tsv
23
bigBed narrowPeak
6
tagAlign
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
136
Homo sapiens
Biosample type
69
tissue
66
cell line
1
primary cell
Organ
564
connective tissue
466
pancreas
446
adipose tissue
323
liver
265
heart
epithelium
232
brain
217
vasculature
216
blood vessel
209
kidney
159
bone element
137
artery
90
limb
54
eye
50
musculature of body
43
nerve
22
vein
16
skeleton
11
lung
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
136
AMP
Genome assembly (visualization)
125
GRCh38
90
hg19
Lab
136
AMP-T2D consortium
assay_title!
single cell RNA-seq
files.file_type!
fastq
month_released!
June, 2019
organ_slims!
epithelium
BIOSAMPLE
ASSAY
136 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
tissue
coronary artery
1
36
5
tibial artery
1
1
23
2
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
smooth muscle cell of the coronary artery
1
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