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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
125
ChIP-seq
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
125
DNA binding
82
DNA accessibility
74
Transcription
3
3D chromatin structure
1
DNA sequencing
Target of assay
90
histone
90
histone modification
51
broad histone mark
39
narrow histone mark
24
control
11
transcription factor
1
RNA binding protein
Date released
664
February, 2021
399
May, 2021
341
May, 2020
314
October, 2019
218
June, 2019
213
August, 2021
142
May, 2022
128
February, 2023
124
August, 2017
120
May, 2019
118
July, 2018
105
July, 2019
82
November, 2017
80
April, 2019
63
March, 2020
61
November, 2019
40
May, 2024
25
February, 2020
16
January, 2021
16
November, 2020
16
October, 2018
12
May, 2023
10
April, 2020
7
December, 2019
6
October, 2017
5
March, 2023
4
March, 2019
4
October, 2022
3
January, 2018
1
August, 2022
Available data
441
bam
419
bed narrowPeak
381
bigWig
fastq
312
bigBed narrowPeak
102
tagAlign
70
bed broadPeak
64
bigBed broadPeak
64
xls
49
txt
25
tsv
5
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
vcf
Organism
294
Homo sapiens
Biosample type
205
tissue
44
cell line
42
in vitro differentiated cells
4
primary cell
Organ
122
kidney
82
brain
35
liver
8
embryo
6
epithelium
5
connective tissue
4
pancreas
1
adipose tissue
Project
295
AMP
Genome assembly (visualization)
162
GRCh38
66
hg19
Lab
135
AMP-T2D consortium
120
Katalin Susztak, Upenn
36
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_title!
single cell RNA-seq
files.file_type!
fastq
organ_slims!
adrenal gland
BIOSAMPLE
ASSAY
295 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
49
6
1
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
+ See 4 more…
cell line
HepG2
18
9
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
21
10
7
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
4
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