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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
36
DNase-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
66
DNA binding
44
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
69
October, 2019
32
June, 2019
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
Available data
114
bam
92
bed narrowPeak
91
bigWig
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
122
Homo sapiens
Biosample type
122
tissue
Organ
859
pancreas
737
liver
679
connective tissue
490
adipose tissue
454
epithelium
300
heart
290
kidney
280
brain
230
vasculature
224
blood vessel
159
bone element
139
artery
122
limb
95
musculature of body
61
eye
54
blood
54
bodily fluid
43
nerve
37
embryo
22
vein
18
ureter
16
skeleton
16
spleen
11
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
122
AMP
Genome assembly (visualization)
96
GRCh38
96
hg19
Lab
122
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
single cell RNA-seq
files.file_type!
tagAlign bed3+
month_released!
November, 2018
BIOSAMPLE
ASSAY
122 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
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