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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
49
total RNA-seq
43
ChIP-seq
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
82
DNA accessibility
49
Transcription
43
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
406
November, 2017
322
August, 2017
298
October, 2019
218
June, 2019
188
August, 2021
165
February, 2023
152
May, 2020
143
February, 2021
142
May, 2022
120
May, 2019
94
December, 2017
87
November, 2018
80
April, 2019
74
October, 2018
46
September, 2018
43
July, 2019
42
May, 2021
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
March, 2020
19
September, 2020
12
May, 2023
12
November, 2020
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
Available data
106
bed narrowPeak
64
xls
49
bam
49
txt
47
bigWig
tsv
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
187
Homo sapiens
Biosample type
122
tissue
35
in vitro differentiated cells
27
cell line
4
primary cell
Organ
122
kidney
26
liver
6
epithelium
5
connective tissue
3
pancreas
1
adipose tissue
Project
188
AMP
Genome assembly (visualization)
90
GRCh38
45
hg19
Lab
120
Katalin Susztak, Upenn
38
AMP-T2D consortium
26
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_title!
single cell RNA-seq
files.file_type!
tsv
lab.title!
Kyle Gaulton, UCSD
organ_slims!
mammary gland
BIOSAMPLE
ASSAY
188 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
49
6
1
islet of Langerhans
1
subcutaneous adipose tissue
1
in vitro differentiated cells
neural progenitor cell
10
21
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
18
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
primary cell
hepatocyte
4
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