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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
2
Hi-C
1
ATAC-seq
Assay category
2
3D chromatin structure
1
DNA accessibility
Date released
1
August, 2021
1
February, 2021
1
March, 2020
Available data
628
bam
570
bigWig
412
fastq
390
bed narrowPeak
307
bigBed narrowPeak
174
tsv
86
tagAlign
60
bed broadPeak
60
bigBed broadPeak
10
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
hdf5
1
vcf
Organism
3
Homo sapiens
Biosample type
2
cell line
1
tissue
Organ
7
pancreas
6
connective tissue
6
epithelium
4
bone element
4
skeleton
3
blood vessel
3
heart
3
liver
3
vasculature
2
musculature of body
2
vein
1
brain
1
kidney
Project
3
AMP
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
2
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
assay_title!
single cell RNA-seq
month_released!
November, 2018
BIOSAMPLE
ASSAY
3 results
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Hi-C
ATAC-seq
cell line
HepG2
1
1
tissue
liver
1
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