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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
ATAC-seq
Assay category
7
DNA accessibility
Date released
4
February, 2021
3
February, 2023
Available data
2832
bam
2636
bigWig
1496
bed narrowPeak
1277
tsv
1200
fastq
972
bigBed narrowPeak
313
bed broadPeak
276
bigBed broadPeak
265
tagAlign
263
bed bed3+
142
txt
101
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
19
hic
12
bed bed3
7
bed bedgraph
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
vcf
Organism
7
Homo sapiens
Biosample type
7
in vitro differentiated cells
Organ
4
connective tissue
Project
7
AMP
Genome assembly (visualization)
7
hg19
Lab
4
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
assay_title!
single cell RNA-seq
files.file_type!
hdf5
lab.title!
Kyle Gaulton, UCSD
month_released!
October, 2019
BIOSAMPLE
ASSAY
7 results
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ATAC-seq
in vitro differentiated cells
adipocyte
4
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
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