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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ChIP-seq
22
ATAC-seq
2
RRBS
1
WGBS
Assay category
61
DNA binding
22
DNA accessibility
3
DNA methylation
Target of assay
46
histone modification
45
histone
37
narrow histone mark
15
transcription factor
8
broad histone mark
1
RNA binding protein
Date released
27
May, 2020
20
May, 2022
17
August, 2021
13
August, 2017
6
October, 2019
1
February, 2021
1
July, 2019
1
November, 2018
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
hdf5
1
vcf
Organism
86
Homo sapiens
Biosample type
65
tissue
16
cell line
5
primary cell
Organ
129
pancreas
105
heart
86
liver
83
kidney
81
epithelium
78
brain
53
connective tissue
52
vasculature
51
blood vessel
49
artery
28
eye
17
musculature of body
14
embryo
9
limb
8
bone element
8
skeleton
6
adipose tissue
3
spleen
1
nerve
1
pericardium
1
pituitary gland
Project
86
AMP
Genome assembly (visualization)
85
hg19
42
GRCh38
Lab
52
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
assay_title!
single cell RNA-seq
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
86 results
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Clear Filters
ChIP-seq
ATAC-seq
RRBS
WGBS
tissue
liver
44
20
1
cell line
HepG2
14
1
1
primary cell
hepatocyte
3
1
Liver fetal (hepatocyte)
1
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