Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
DNase-seq
73
ChIP-seq
17
WGBS
13
RRBS
3
Hi-C
Assay category
190
DNA accessibility
73
DNA binding
30
DNA methylation
3
3D chromatin structure
Target of assay
47
transcription factor
26
histone
26
histone modification
14
broad histone mark
12
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
173
June, 2019
60
November, 2017
21
August, 2017
19
July, 2019
16
November, 2018
6
October, 2019
1
November, 2020
Available data
3039
bam
2832
bigWig
1666
bed narrowPeak
1303
tsv
1033
fastq
966
bigBed narrowPeak
391
tagAlign
300
bed broadPeak
263
bigBed broadPeak
252
bed bed3+
148
txt
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
21
zippedFastqFolder
18
bedpe bed3+
17
hic
12
bed bed3
7
bed bedgraph
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
296
Homo sapiens
Biosample type
201
tissue
61
cell line
33
primary cell
1
in vitro differentiated cells
Organ
82
kidney
67
liver
43
brain
38
heart
37
limb
37
musculature of body
epithelium
21
vasculature
18
ureter
16
blood vessel
14
pancreas
13
connective tissue
5
eye
4
adipose tissue
4
artery
4
vein
3
spleen
2
nerve
1
pericardium
Project
296
AMP
Genome assembly (visualization)
265
GRCh38
262
hg19
Lab
296
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
13
inconsistent control read length
2
inconsistent assembly
assay_title!
single cell RNA-seq
organ_slims!
epithelium
BIOSAMPLE
ASSAY
296 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
WGBS
RRBS
Hi-C
tissue
heart
18
1
muscle of arm
17
brain
14
1
kidney
13
1
muscle of leg
13
1
+ See 45 more…
cell line
HepG2
58
1
Panc1
1
1
primary cell
skeletal muscle myoblast
1
13
1
astrocyte of the cerebellum
1
2
1
cardiac fibroblast
3
1
brain pericyte
1
1
cardiac muscle cell
1
1
+ See 5 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
Download