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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
300
total RNA-seq
single cell RNA-seq
6
WGBS
2
ATAC-seq
2
small RNA-seq
1
pCHi-C
Assay category
302
Transcription
6
DNA methylation
2
DNA accessibility
Date released
116
July, 2018
89
August, 2017
40
May, 2021
32
February, 2021
September, 2018
20
November, 2019
6
March, 2020
4
July, 2019
2
October, 2018
1
August, 2021
1
February, 2020
Available data
537
bam
471
bigWig
324
fastq
311
tsv
168
bed narrowPeak
80
zippedFastqFolder
77
bigBed narrowPeak
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
311
Homo sapiens
Biosample type
269
tissue
34
cell line
8
primary cell
Organ
474
connective tissue
401
adipose tissue
311
pancreas
174
liver
76
heart
62
blood vessel
62
vasculature
60
epithelium
bone element
56
artery
23
brain
19
kidney
14
embryo
9
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
303
AMP
6
HPAP
2
T1D
Genome assembly (visualization)
302
hg19
300
GRCh38
Lab
304
AMP-T2D consortium
6
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
Audit category:
34
inconsistent ontology term
assay_title!
single cell RNA-seq
month_released!
September, 2018
organ_slims!
bone element
BIOSAMPLE
ASSAY
311 results
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total RNA-seq
WGBS
ATAC-seq
small RNA-seq
pCHi-C
tissue
islet of Langerhans
261
1
body of pancreas
3
2
pancreas
1
1
cell line
EndoC_BH1
33
1
primary cell
pancreatic alpha cell
6
pancreatic acinar cell
2
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