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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
ChIP-seq
single cell RNA-seq
6
WGBS
5
GRO-seq
2
ATAC-seq
2
DNase-seq
Assay category
136
DNA binding
6
DNA methylation
4
DNA accessibility
Target of assay
58
transcription factor
57
histone
57
histone modification
35
RNA binding protein
30
broad histone mark
27
narrow histone mark
20
chromatin remodeller
20
control
Date released
52
December, 2017
23
November, 2018
22
November, 2017
21
October, 2018
12
August, 2017
12
January, 2019
5
January, 2018
2
December, 2018
1
March, 2019
1
October, 2017
Available data
151
fastq
144
bam
126
bigWig
111
bed narrowPeak
88
bigBed narrowPeak
17
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
3
bed broadPeak
2
bigBed broadPeak
Organism
151
Homo sapiens
Biosample type
52
in vitro differentiated cells
48
cell line
47
tissue
4
stem cell
Organ
62
liver
25
pancreas
19
epithelium
14
embryo
10
blood
10
bodily fluid
9
connective tissue
7
spleen
4
adipose tissue
2
brain
Project
151
AMP
Genome assembly (visualization)
124
GRCh38
120
hg19
5
hg18
Lab
150
AMP-T2D consortium
1
Mark McCarthy, Oxford
Audit category:
4
inconsistent ontology term
1
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
23
inconsistent control read length
8
inconsistent control run_type
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
151 results
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ChIP-seq
WGBS
GRO-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
9
1
Posterior foregut
5
1
definitive endodermal cell
5
1
primitive gut cell
5
1
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cell line
HepG2
38
GM12878
10
tissue
body of pancreas
20
spleen
7
right lobe of liver
6
adipose tissue
3
islet of Langerhans
2
1
+ See 5 more…
stem cell
hESC
3
1
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