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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ATAC-seq
59
total RNA-seq
18
ChIP-seq
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
whole genome sequencing assay
Assay category
72
DNA accessibility
59
Transcription
18
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
May, 2021
165
May, 2022
160
August, 2021
102
February, 2023
45
May, 2020
40
May, 2024
33
February, 2021
19
September, 2020
16
January, 2021
11
May, 2023
10
April, 2020
10
November, 2020
7
August, 2020
5
March, 2019
5
March, 2023
3
October, 2022
1
October, 2017
0
February, 2020
Available data
80
bed narrowPeak
64
xls
49
txt
16
bigWig
10
tsv
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
160
Homo sapiens
Biosample type
122
tissue
34
cell line
4
in vitro differentiated cells
Organ
122
kidney
31
liver
4
connective tissue
2
pancreas
Project
160
AMP
Genome assembly (visualization)
64
GRCh38
20
hg19
Lab
120
Katalin Susztak, Upenn
AMP-T2D consortium
36
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
assay_title!
single cell RNA-seq
lab.title!
AMP-T2D consortium
month_released!
May, 2021
BIOSAMPLE
ASSAY
160 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
whole genome sequencing assay
tissue
kidney
64
49
6
1
islet of Langerhans
1
1
cell line
HepG2
9
18
2
1
1
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
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