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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
single cell RNA-seq
50
ATAC-seq
48
snATAC-seq
47
WGBS
3
Hi-C
Assay category
98
DNA accessibility
92
Transcription
47
DNA methylation
3
3D chromatin structure
Date released
101
May, 2022
76
February, 2023
33
February, 2021
19
September, 2020
7
August, 2020
3
October, 2022
1
March, 2019
Available data
135
fastq
101
zippedFastqFolder
10
bigWig
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
240
Homo sapiens
Biosample type
239
primary cell
1
tissue
Organ
153
pancreas
152
epithelium
Project
239
HPAP
1
AMP
Genome assembly (visualization)
10
GRCh38
3
hg19
Lab
3694
AMP-T2D consortium
343
Kyle Gaulton, UCSD
239
Klaus Kaestner, Upenn
131
Katalin Susztak, Upenn
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
assay_title!
single cell RNA-seq
month_released!
August, 2022
BIOSAMPLE
ASSAY
240 results
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total RNA-seq
ATAC-seq
snATAC-seq
WGBS
Hi-C
primary cell
pancreatic alpha cell
42
29
31
1
Langerhans cell
48
pancreatic beta cell
11
16
16
1
exocrine cell
39
pancreatic acinar cell
4
1
tissue
islet of Langerhans
1
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