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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ChIP-seq
56
total RNA-seq
44
ATAC-seq
9
DNase-seq
single cell RNA-seq
3
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
99
DNA binding
56
Transcription
54
DNA accessibility
3
3D chromatin structure
Target of assay
70
histone
70
histone modification
45
broad histone mark
25
narrow histone mark
21
control
8
transcription factor
4
RNA binding protein
Date released
66
February, 2021
50
May, 2019
47
October, 2019
35
February, 2023
July, 2019
5
June, 2019
4
March, 2020
3
February, 2020
3
November, 2017
Available data
171
bam
140
bigWig
127
bed narrowPeak
79
bigBed narrowPeak
57
tsv
13
bed broadPeak
13
bigBed broadPeak
9
bed bed3+
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
1
tar
Organism
213
Homo sapiens
Biosample type
120
tissue
66
cell line
27
primary cell
Organ
860
pancreas
780
liver
662
connective tissue
479
adipose tissue
441
epithelium
279
kidney
275
heart
268
brain
218
vasculature
213
blood vessel
159
bone element
136
artery
117
limb
85
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
213
AMP
Genome assembly (visualization)
179
GRCh38
150
hg19
Lab
213
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
single cell RNA-seq
month_released!
April, 2020
July, 2019
March, 2023
BIOSAMPLE
ASSAY
213 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
pCHi-C
tissue
coronary artery
5
1
35
2
tibial artery
23
1
1
2
ascending aorta
16
1
1
aorta
13
1
1
1
thoracic aorta
16
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
kidney capillary endothelial cell
1
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