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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
44
ATAC-seq
34
ChIP-seq
4
DNase-seq
single cell RNA-seq
Assay category
54
Transcription
48
DNA accessibility
34
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
26
October, 2019
5
May, 2019
July, 2019
2
February, 2020
2
June, 2019
Available data
99
bam
82
bigWig
73
bed narrowPeak
54
tsv
25
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
136
Homo sapiens
Biosample type
70
tissue
66
cell line
Organ
860
pancreas
780
liver
662
connective tissue
479
adipose tissue
441
epithelium
279
kidney
275
heart
268
brain
218
vasculature
213
blood vessel
159
bone element
136
artery
117
limb
85
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
18
ureter
16
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
136
AMP
Genome assembly (visualization)
125
GRCh38
90
hg19
Lab
136
AMP-T2D consortium
assay_title!
single cell RNA-seq
month_released!
July, 2019
organ_slims!
pericardium
BIOSAMPLE
ASSAY
136 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
tissue
coronary artery
1
35
5
2
tibial artery
1
1
23
2
cell line
smooth muscle cell of the coronary artery
52
8
6
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