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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
417
total RNA-seq
75
ChIP-seq
34
ATAC-seq
6
WGBS
6
pCHi-C
3
small RNA-seq
1
DNase-seq
1
RNA microarray
1
RRBS
Assay category
420
Transcription
75
DNA binding
35
DNA accessibility
7
DNA methylation
Target of assay
34
histone
34
histone modification
24
control
20
broad histone mark
17
transcription factor
14
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
57
August, 2017
32
February, 2023
23
October, 2018
22
October, 2019
13
July, 2019
June, 2019
3
February, 2020
1
August, 2018
1
August, 2021
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
441
bam
424
bigWig
406
tsv
44
fastq
39
bed narrowPeak
9
bigBed narrowPeak
8
tagAlign
5
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
2
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
Organism
543
Homo sapiens
Biosample type
540
tissue
3
primary cell
1
in vitro differentiated cells
Organ
862
pancreas
788
liver
662
connective tissue
490
adipose tissue
434
epithelium
265
heart
253
brain
223
vasculature
219
blood vessel
209
kidney
159
bone element
137
artery
90
limb
69
blood
69
bodily fluid
54
eye
52
musculature of body
43
nerve
37
embryo
25
spleen
22
vein
16
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
544
AMP
Genome assembly (visualization)
453
hg19
423
GRCh38
Lab
544
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
single cell RNA-seq
month_released!
June, 2019
organ_slims!
adrenal gland
BIOSAMPLE
ASSAY
544 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
pCHi-C
small RNA-seq
DNase-seq
RNA microarray
RRBS
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
islet of Langerhans
14
2
1
4
omental fat pad
5
11
1
1
1
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primary cell
mesenchymal stem cell of adipose
1
1
retinal pigment epithelial cell
1
in vitro differentiated cells
white fat cell
1
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