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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
single cell RNA-seq
2
DNase-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
31
DNA binding
21
Transcription
7
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
June, 2019
18
November, 2017
15
July, 2019
12
February, 2020
9
October, 2019
4
October, 2017
3
May, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
44
bam
23
bigWig
23
tsv
19
tagAlign
11
fastq
6
bed narrowPeak
6
bigBed narrowPeak
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
66
Homo sapiens
Biosample type
56
tissue
10
primary cell
Organ
711
pancreas
liver
592
connective tissue
458
adipose tissue
343
epithelium
180
kidney
170
heart
159
bone element
152
vasculature
149
blood vessel
117
artery
68
blood
68
bodily fluid
66
brain
52
eye
41
limb
27
musculature of body
25
embryo
19
nerve
19
spleen
16
skeleton
11
lung
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
66
AMP
Genome assembly (visualization)
24
hg19
16
GRCh38
Lab
66
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
single cell RNA-seq
month_released!
June, 2019
organ_slims!
liver
target.investigated_as!
histone
BIOSAMPLE
ASSAY
66 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
DNase-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
3
1
1
2
1
cerebellum (Hemisphere)
2
1
1
1
frontal cortex
2
1
1
temporal lobe
2
1
1
caudate nucleus
2
1
+ See 22 more…
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
brain pericyte
1
See all biosamples
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