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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
14
total RNA-seq
2
DNase-seq
2
Hi-C
1
FAIRE-seq
1
GRO-seq
Assay category
39
DNA binding
14
Transcription
3
DNA accessibility
2
3D chromatin structure
Target of assay
27
histone
27
histone modification
14
narrow histone mark
13
broad histone mark
9
control
3
transcription factor
Date released
21
October, 2019
13
December, 2017
13
February, 2018
8
August, 2021
2
May, 2021
1
January, 2018
1
March, 2020
Available data
56
bam
44
bigWig
27
bed narrowPeak
27
fastq
14
tsv
13
bigBed narrowPeak
5
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
hic
1
bedpe bed3+
1
tar
Organism
59
Homo sapiens
Biosample type
29
in vitro differentiated cells
22
primary cell
8
cell line
Organ
862
pancreas
788
liver
662
connective tissue
adipose tissue
434
epithelium
265
heart
253
brain
223
vasculature
219
blood vessel
209
kidney
159
bone element
137
artery
90
limb
69
blood
69
bodily fluid
54
eye
52
musculature of body
43
nerve
37
embryo
25
spleen
22
vein
16
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
59
AMP
Genome assembly (visualization)
46
hg19
41
GRCh38
1
hg18
Lab
59
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
1
audit script error
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
assay_title!
single cell RNA-seq
month_released!
June, 2019
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
59 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
FAIRE-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
cell line
H1-hESC
8
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