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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ChIP-seq
single cell RNA-seq
38
ATAC-seq
32
snATAC-seq
26
total RNA-seq
Assay category
75
DNA binding
70
DNA accessibility
26
Transcription
Target of assay
40
transcription factor
18
control
17
histone
17
histone modification
9
narrow histone mark
8
broad histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
665
February, 2021
400
November, 2017
382
August, 2017
373
May, 2021
341
May, 2020
279
October, 2019
207
August, 2021
198
June, 2019
152
February, 2023
120
July, 2018
115
May, 2019
92
July, 2019
87
November, 2018
86
May, 2022
80
April, 2019
75
December, 2017
74
October, 2018
58
March, 2020
45
November, 2019
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
16
January, 2021
12
May, 2023
11
September, 2018
10
April, 2020
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
1
August, 2018
1
August, 2022
1
December, 2019
1
October, 2022
Available data
99
bam
99
fastq
94
bed narrowPeak
76
bigWig
36
bigBed narrowPeak
21
zippedFastqFolder
16
bed bed3+
7
txt
Organism
170
Homo sapiens
Biosample type
123
tissue
24
in vitro differentiated cells
21
primary cell
3
stem cell
Organ
104
pancreas
103
liver
epithelium
13
embryo
10
lung
1
musculature of body
Project
140
AMP
21
HPAP
10
LungMap
Genome assembly (visualization)
100
hg19
61
GRCh38
Lab
76
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
21
Klaus Kaestner, Upenn
10
Xin Sun, UCSD
Audit category:
27
inconsistent control
1
audit script error
Audit category:
1
missing controlled_by
Audit category:
10
inconsistent control read length
assay_title!
single cell RNA-seq
organ_slims!
epithelium
BIOSAMPLE
ASSAY
171 results
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Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
total RNA-seq
tissue
liver
38
20
20
islet of Langerhans
18
6
lung
10
right lobe of liver
10
skeletal muscle tissue
1
in vitro differentiated cells
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
primary cell
Langerhans cell
21
stem cell
hESC
3
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