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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
single cell RNA-seq
76
ATAC-seq
65
total RNA-seq
21
ChIP-seq
6
snATAC-seq
3
STARR-seq
2
Capture-C
2
Hi-C
1
RNA microarray
Assay category
82
DNA accessibility
65
Transcription
21
DNA binding
2
3D chromatin structure
Target of assay
14
histone
14
histone modification
7
broad histone mark
7
control
7
narrow histone mark
Date released
663
February, 2021
373
May, 2021
328
August, 2017
273
October, 2019
197
June, 2019
176
August, 2021
152
February, 2023
147
May, 2020
120
July, 2018
115
May, 2019
85
November, 2017
84
July, 2019
80
April, 2019
74
October, 2018
55
March, 2020
46
May, 2022
45
November, 2019
40
May, 2024
39
February, 2018
34
December, 2018
31
November, 2018
27
December, 2017
25
January, 2019
24
February, 2020
23
October, 2017
16
January, 2021
12
May, 2023
11
September, 2018
10
April, 2020
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
1
August, 2018
1
August, 2022
1
December, 2019
1
October, 2022
Available data
89
bed narrowPeak
64
xls
49
txt
45
bam
30
bigWig
20
tagAlign
16
tsv
2
bed bed3+
1
bedpe bed3+
1
hic
Organism
175
Homo sapiens
Biosample type
123
tissue
42
in vitro differentiated cells
11
cell line
Organ
122
kidney
liver
8
embryo
epithelium
5
connective tissue
4
pancreas
1
adipose tissue
Project
176
AMP
Genome assembly (visualization)
102
GRCh38
42
hg19
Lab
120
Katalin Susztak, Upenn
47
AMP-T2D consortium
5
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
assay_title!
single cell RNA-seq
organ_slims!
epithelium
liver
target.investigated_as!
other context
BIOSAMPLE
ASSAY
176 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
tissue
kidney
64
49
6
1
islet of Langerhans
1
1
subcutaneous adipose tissue
1
in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
1
1
osteoblast
1
1
cell line
H1-hESC
8
HEK293T
2
Synthesized DNA
1
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