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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
22
ChIP-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
82
DNA accessibility
74
Transcription
22
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
17
histone
histone modification
11
control
11
transcription factor
9
narrow histone mark
8
broad histone mark
1
RNA binding protein
Date released
665
February, 2021
314
May, 2020
314
November, 2017
235
May, 2021
197
August, 2017
190
August, 2021
181
June, 2019
152
February, 2023
120
July, 2018
92
July, 2019
87
November, 2018
86
May, 2022
86
October, 2019
58
December, 2017
56
March, 2020
45
November, 2019
44
October, 2018
35
December, 2018
26
May, 2019
24
February, 2020
23
February, 2018
23
January, 2019
20
April, 2019
16
January, 2021
12
May, 2023
11
October, 2017
10
April, 2020
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
5
May, 2024
1
August, 2018
1
August, 2022
1
December, 2019
1
October, 2022
Available data
87
bed narrowPeak
64
xls
49
txt
32
bam
28
bigWig
25
tsv
7
tagAlign
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
189
Homo sapiens
Biosample type
123
tissue
39
cell line
28
in vitro differentiated cells
Organ
122
kidney
29
liver
8
embryo
5
connective tissue
4
pancreas
epithelium
1
adipose tissue
Project
190
AMP
Genome assembly (visualization)
89
GRCh38
42
hg19
Lab
120
Katalin Susztak, Upenn
33
AMP-T2D consortium
33
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
assay_title!
single cell RNA-seq
organ_slims!
epithelium
nerve
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
190 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
49
6
1
islet of Langerhans
1
1
subcutaneous adipose tissue
1
cell line
HepG2
9
15
2
1
1
H1-hESC
8
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
7
adipocyte
1
1
osteoblast
1
1
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