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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
456
ChIP-seq
310
total RNA-seq
100
ATAC-seq
single cell RNA-seq
1
pCHi-C
Assay category
456
DNA binding
310
Transcription
100
DNA accessibility
Target of assay
244
transcription factor
115
histone
115
histone modification
94
control
66
recombinant protein
65
narrow histone mark
50
broad histone mark
37
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
697
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
314
October, 2019
218
June, 2019
213
August, 2021
204
February, 2023
166
May, 2022
120
July, 2018
120
May, 2019
105
July, 2019
94
December, 2017
November, 2018
80
April, 2019
76
October, 2018
72
September, 2018
64
March, 2020
61
November, 2019
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
September, 2020
16
January, 2021
16
November, 2020
12
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
7
December, 2019
5
March, 2019
5
March, 2023
4
October, 2022
1
August, 2018
1
August, 2022
Available data
791
bam
710
bigWig
340
bed narrowPeak
326
fastq
312
bigBed narrowPeak
305
tsv
128
tagAlign
70
bed broadPeak
64
bigBed broadPeak
3
tar
Organism
867
Homo sapiens
Biosample type
395
tissue
316
cell line
156
primary cell
Organ
509
liver
120
pancreas
91
brain
6
epithelium
6
vasculature
3
blood vessel
Project
822
AMP
45
T1D
Genome assembly (visualization)
657
hg19
603
GRCh38
Lab
822
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
assay_title!
single cell RNA-seq
month_released!
November, 2018
BIOSAMPLE
ASSAY
867 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
tissue
liver
50
143
islet of Langerhans
120
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
+ See 3 more…
cell line
HepG2
315
1
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 27 more…
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