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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ATAC-seq
21
total RNA-seq
12
ChIP-seq
3
Hi-C
single cell RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
37
DNA accessibility
25
Transcription
12
DNA binding
3
3D chromatin structure
Target of assay
10
histone
10
histone modification
6
broad histone mark
4
narrow histone mark
2
control
1
RNA binding protein
transcription factor
Date released
692
February, 2021
383
May, 2021
364
August, 2017
341
May, 2020
307
October, 2019
214
June, 2019
204
February, 2023
202
August, 2021
166
May, 2022
162
November, 2017
120
July, 2018
115
May, 2019
105
July, 2019
74
April, 2019
72
September, 2018
64
March, 2020
61
October, 2018
60
November, 2019
52
December, 2017
39
February, 2018
35
May, 2024
25
February, 2020
23
November, 2018
23
October, 2017
19
September, 2020
16
January, 2019
16
January, 2021
16
November, 2020
12
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
7
December, 2018
7
December, 2019
5
March, 2019
5
March, 2023
4
October, 2022
1
August, 2018
1
August, 2022
Available data
58
bam
36
bed narrowPeak
30
bigWig
20
tsv
3
hic
2
bedpe bed3+
Organism
73
Homo sapiens
Biosample type
52
tissue
17
cell line
5
in vitro differentiated cells
2
stem cell
1
primary cell
Organ
54
pancreas
15
epithelium
11
kidney
2
adipose tissue
2
connective tissue
Project
72
AMP
4
community
1
ITG
Genome assembly (visualization)
69
GRCh38
59
hg19
Lab
61
AMP-T2D consortium
11
Katalin Susztak, Upenn
4
Anna Gloyn, Oxford
1
ITG
Audit category:
21
inconsistent ontology term
assay_title!
single cell RNA-seq
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
77 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
Hi-C
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
tissue
islet of Langerhans
19
19
1
kidney
11
adipose tissue
1
adipose tissue(adipose white tissue)
1
cell line
EndoC_BH1
1
1
12
1
EndoC-BH1
1
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
stem cell
SB Ad3.1
1
1
primary cell
chondrocytes
1
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