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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
100
ATAC-seq
50
ChIP-seq
1
pCHi-C
Assay category
190
Transcription
100
DNA accessibility
50
DNA binding
Target of assay
27
histone
27
histone modification
27
narrow histone mark
23
control
Date released
665
February, 2021
369
November, 2017
341
May, 2020
333
May, 2021
October, 2019
217
August, 2017
210
June, 2019
208
August, 2021
148
February, 2023
113
May, 2019
99
July, 2019
90
December, 2017
76
April, 2019
62
May, 2022
59
November, 2018
50
March, 2020
39
February, 2018
35
May, 2024
33
December, 2018
24
February, 2020
24
January, 2019
18
October, 2017
18
October, 2018
12
May, 2023
10
April, 2020
8
January, 2018
8
January, 2021
7
December, 2019
6
November, 2019
6
November, 2020
5
March, 2023
1
August, 2018
1
October, 2022
Available data
283
bam
260
bigWig
189
tsv
50
tagAlign
27
bed narrowPeak
Organism
341
Homo sapiens
Biosample type
193
tissue
147
primary cell
1
cell line
Organ
194
liver
Project
296
AMP
45
T1D
Genome assembly (visualization)
260
hg19
207
GRCh38
Lab
296
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
assay_title!
single cell RNA-seq
month_released!
October, 2019
organ_slims!
pancreas
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
341 results
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total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
tissue
liver
143
50
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 24 more…
cell line
HepG2
1
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