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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
10
MeRIP-seq
8
DNase-seq
7
WGBS
4
total RNA-seq
1
ATAC-seq
1
FAIRE-seq
single cell RNA-seq
Assay category
70
DNA binding
10
DNA accessibility
7
DNA methylation
4
Transcription
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
11
control
7
chromatin remodeller
5
nucleotide modification
3
other context
3
other post-translational modification
Date released
697
February, 2021
411
August, 2017
399
May, 2021
341
May, 2020
November, 2017
228
October, 2019
213
August, 2021
203
February, 2023
188
June, 2019
166
May, 2022
120
July, 2018
94
December, 2017
92
May, 2019
90
July, 2019
85
November, 2018
80
April, 2019
76
October, 2018
72
September, 2018
62
March, 2020
61
November, 2019
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
19
September, 2020
16
January, 2021
16
November, 2020
13
February, 2020
12
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
7
December, 2019
7
October, 2017
5
March, 2019
5
March, 2023
4
October, 2022
1
August, 2018
1
August, 2022
Available data
91
bam
85
fastq
83
bigWig
73
bed narrowPeak
72
bigBed narrowPeak
8
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
4
tsv
Organism
101
Homo sapiens
Biosample type
67
cell line
28
tissue
6
primary cell
Organ
53
liver
17
pancreas
15
blood
15
bodily fluid
9
spleen
7
connective tissue
6
epithelium
brain
1
adipose tissue
Project
101
AMP
Genome assembly (visualization)
83
GRCh38
75
hg19
Lab
91
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
single cell RNA-seq
month_released!
November, 2017
organ_slims!
brain
BIOSAMPLE
ASSAY
101 results
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Clear Filters
ChIP-seq
MeRIP-seq
DNase-seq
WGBS
total RNA-seq
ATAC-seq
FAIRE-seq
cell line
HepG2
45
1
GM12878
15
EndoC_BH1
6
tissue
spleen
6
1
2
liver
4
2
body of pancreas
2
2
islet of Langerhans
4
pancreas
2
1
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primary cell
osteoblast
1
4
1
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