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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
ChIP-seq
56
total RNA-seq
46
ATAC-seq
8
snATAC-seq
4
DNase-seq
single cell RNA-seq
1
pCHi-C
Assay category
98
DNA binding
58
DNA accessibility
56
Transcription
Target of assay
56
transcription factor
25
histone
25
histone modification
15
control
14
broad histone mark
11
RNA binding protein
11
narrow histone mark
10
chromatin remodeller
Date released
66
February, 2021
35
February, 2023
30
October, 2019
27
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
5
May, 2019
3
July, 2019
2
February, 2020
2
June, 2019
1
January, 2018
1
March, 2020
Available data
162
bam
140
bigWig
128
bed narrowPeak
79
bigBed narrowPeak
60
fastq
57
tsv
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
213
Homo sapiens
Biosample type
127
cell line
76
tissue
10
primary cell
Organ
866
pancreas
790
liver
680
connective tissue
491
adipose tissue
454
epithelium
300
heart
290
kidney
283
brain
230
vasculature
224
blood vessel
159
bone element
139
artery
122
limb
95
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
18
ureter
16
skeleton
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
205
AMP
8
T1D
Genome assembly (visualization)
182
GRCh38
148
hg19
Lab
205
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
assay_title!
single cell RNA-seq
organ_slims!
lung
BIOSAMPLE
ASSAY
213 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
DNase-seq
pCHi-C
cell line
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
1
tissue
coronary artery
5
1
36
2
tibial artery
23
1
1
2
islet of Langerhans
4
ovary
1
primary cell
peripheral blood mononuclear cell
8
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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