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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
snATAC-seq
13
ChIP-seq
single cell RNA-seq
2
pCHi-C
1
ATAC-seq
Assay category
19
DNA accessibility
13
DNA binding
Target of assay
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
5
histone
5
histone modification
5
narrow histone mark
Date released
10
April, 2020
8
January, 2021
4
January, 2019
4
October, 2019
3
November, 2018
2
December, 2018
2
March, 2020
1
January, 2018
Available data
9
bam
9
fastq
4
bigWig
3
bed narrowPeak
3
bigBed narrowPeak
2
tsv
Organism
33
Homo sapiens
Biosample type
16
tissue
10
cell line
8
primary cell
Organ
847
pancreas
640
connective tissue
474
adipose tissue
452
liver
445
epithelium
283
heart
280
brain
280
kidney
221
vasculature
216
blood vessel
159
bone element
134
artery
122
limb
95
musculature of body
60
eye
43
nerve
34
embryo
22
vein
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
16
AMP
10
LungMap
8
T1D
Genome assembly (visualization)
4
hg19
3
GRCh38
Lab
16
AMP-T2D consortium
10
Xin Sun, UCSD
8
Kyle Gaulton, UCSD
assay_title!
single cell RNA-seq
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
34 results
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snATAC-seq
ChIP-seq
pCHi-C
ATAC-seq
tissue
lung
10
1
islet of Langerhans
4
ovary
1
cell line
GM12878
9
1
primary cell
peripheral blood mononuclear cell
8
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