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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
223
ChIP-seq
36
DNase-seq
36
total RNA-seq
32
ATAC-seq
7
pCHi-C
4
small RNA-seq
3
Hi-C
3
RRBS
single cell RNA-seq
1
FAIRE-seq
Assay category
223
DNA binding
69
DNA accessibility
40
Transcription
3
3D chromatin structure
3
DNA methylation
Target of assay
190
histone
190
histone modification
120
narrow histone mark
70
broad histone mark
29
control
4
RNA binding protein
4
transcription factor
Date released
107
October, 2019
91
November, 2017
37
June, 2019
32
February, 2023
28
May, 2019
16
July, 2019
16
October, 2017
13
February, 2020
3
March, 2020
2
November, 2018
Available data
247
bam
236
bed narrowPeak
225
bigWig
133
bigBed narrowPeak
118
tagAlign
51
bed broadPeak
42
bigBed broadPeak
39
bed bed3+
29
tsv
21
fastq
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
345
Homo sapiens
Biosample type
321
tissue
23
primary cell
1
cell line
Organ
866
pancreas
790
liver
680
connective tissue
491
adipose tissue
454
epithelium
300
heart
290
kidney
283
brain
230
vasculature
224
blood vessel
159
bone element
139
artery
122
limb
95
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
18
ureter
16
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
345
AMP
Genome assembly (visualization)
220
GRCh38
195
hg19
Lab
345
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
345 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
tissue
brain
20
14
1
1
1
layer of hippocampus
23
islet of Langerhans
2
14
2
4
retina
3
3
15
caudate nucleus
15
1
1
+ See 79 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
retinal pigment epithelial cell
3
1
1
brain pericyte
1
1
+ See 1 more…
cell line
MCF-7
1
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