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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ChIP-seq
33
DNase-seq
7
total RNA-seq
6
Hi-C
6
RRBS
2
pCHi-C
2
small RNA-seq
1
ATAC-seq
1
WGBS
single cell RNA-seq
1
snATAC-seq
Assay category
43
DNA binding
35
DNA accessibility
9
Transcription
7
DNA methylation
6
3D chromatin structure
Target of assay
37
histone
37
histone modification
20
broad histone mark
17
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
12
July, 2019
7
May, 2019
6
March, 2020
4
October, 2019
2
February, 2020
1
January, 2018
1
May, 2022
Available data
69
bigWig
60
bed narrowPeak
58
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
11
tsv
5
bed bedMethyl
5
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
102
Homo sapiens
Biosample type
87
tissue
15
primary cell
Organ
866
pancreas
790
liver
680
connective tissue
491
adipose tissue
454
epithelium
300
heart
290
kidney
283
brain
230
vasculature
224
blood vessel
159
bone element
139
artery
122
limb
95
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
18
ureter
16
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
102
AMP
Genome assembly (visualization)
75
hg19
54
GRCh38
Lab
102
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
102 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
RRBS
pCHi-C
small RNA-seq
ATAC-seq
WGBS
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
psoas muscle
2
2
1
+ See 6 more…
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
pericardium fibroblast
1
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