Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1459total RNA-seq
  • single cell RNA-seq
  • 86RNA microarray
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5STARR-seq
  • 3snDrop-seq
Assay category
  • 1477Transcription
Target of assay
  • 5control
  • 5nucleotide modification
Date released
  • 631February, 2021
  • 182May, 2021
  • 145May, 2020
  • 120July, 2018
  • 93February, 2023
  • 89August, 2017
  • 79August, 2021
  • 49July, 2019
  • 26May, 2022
  • 26October, 2019
  • 26September, 2018
  • 25February, 2020
  • 20November, 2019
  • 16September, 2020
  • 15February, 2018
  • 15March, 2020
  • 14November, 2020
  • 7December, 2019
  • 2October, 2018
  • 1May, 2023
Available data
  • 1270tsv
  • 1232bam
  • 1228bigWig
  • 232fastq
  • 143txt
  • 2bed bed3+
Organism
  • 1581Homo sapiens
Biosample type
  • 1136tissue
  • 190primary cell
  • 136in vitro differentiated cells
  • 119cell line
Organ
  • 471connective tissue
  • 409pancreas
  • 400adipose tissue
  • 189liver
  • 146bone element
  • 133epithelium
  • 69heart
  • 64kidney
  • 59blood vessel
  • 59vasculature
  • 54artery
  • 21brain
  • 19eye
  • 14embryo
  • 7musculature of body
  • 4skeleton
  • 3limb
  • 1nerve
  • 1spinal cord
Project
  • 1429AMP
  • 92HPAP
  • 60T1D
Genome assembly (visualization)
  • 1229hg19
  • 1227GRCh38
Lab
  • 1325AMP-T2D consortium
  • 92Klaus Kaestner, Upenn
  • 70Kyle Gaulton, UCSD
  • 49Katalin Susztak, Upenn
  • 20Karen Mohlke, UNC
  • 15Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
  • 217inconsistent ontology term
  • 2audit script error
assay_title!
  • single cell RNA-seq
BIOSAMPLE
ASSAY

1581 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
RNA microarray
small RNA-seq
MeRIP-seq
STARR-seq
snDrop-seq
tissue
adipose tissue382
islet of Langerhans2924
liver1671
bone element84
bone tissue58
primary cell
monocyte52
pancreatic alpha cell52
exocrine cell39
pancreatic beta cell21
hepatocyte5
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
embryonic stem cell7
neural progenitor cell7
cell line
smooth muscle cell of the coronary artery52
EndoC_BH1336
HepG292
H1-hESC8
HEK293T2
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego