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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 190total RNA-seq
  • 181ChIP-seq
  • 105ATAC-seq
  • single cell RNA-seq
  • 28pCHi-C
  • 27DNase-seq
  • 11small RNA-seq
  • 9Hi-C
  • 5snATAC-seq
  • 4MeRIP-seq
  • 3FAIRE-seq
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 201Transcription
  • 181DNA binding
  • 140DNA accessibility
  • 93D chromatin structure
  • 1DNA methylation
Target of assay
  • 133histone
  • 133histone modification
  • 90narrow histone mark
  • 43broad histone mark
  • 33transcription factor
  • 17control
  • 9RNA binding protein
  • 2nucleotide modification
Date released
  • 134May, 2021
  • 88May, 2020
  • 50October, 2019
  • 48August, 2021
  • 46February, 2023
  • 36July, 2019
  • 33August, 2017
  • 32March, 2020
  • 30June, 2019
  • 25February, 2020
  • 10February, 2021
  • 7October, 2017
  • 5March, 2019
  • 4November, 2020
  • 3December, 2017
  • 3October, 2022
  • 2January, 2021
  • 2July, 2018
  • 2November, 2018
  • 2September, 2017
  • 1April, 2019
  • 1February, 2018
  • 1March, 2023
  • 1May, 2022
  • 1November, 2019
  • 1October, 2018
Available data
  • 398bam
  • 382bigWig
  • 217tsv
  • 173bed narrowPeak
  • 116tagAlign
  • 68bed bed3+
  • 46fastq
  • 40bigBed narrowPeak
  • 26bed broadPeak
  • 24bigBed broadPeak
  • 8hic
  • 7bedpe bed3+
  • 6bed bed3
  • 5txt
  • 3cool
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 568Homo sapiens
Biosample type
  • 233tissue
  • 222primary cell
  • 112in vitro differentiated cells
  • 1stem cell
Organ
  • 71brain
  • 68pancreas
  • 53connective tissue
  • 24heart
  • 21epithelium
  • 19kidney
  • 17adipose tissue
  • 15liver
  • 8bone element
  • 8musculature of body
  • 8skeleton
  • 7blood vessel
  • 7vasculature
  • 4artery
  • 3eye
  • 3limb
  • 2blood
  • 2bodily fluid
  • 2embryo
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1nerve
  • 1ovary
  • 1pericardium
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
  • 1vein
Project
  • 426AMP
  • 138T1D
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 409hg19
  • 342GRCh38
Lab
  • 394AMP-T2D consortium
  • 154Kyle Gaulton, UCSD
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 4Struan F.A. Grant, CHOP
  • 3Klaus Kaestner, Upenn
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 47inconsistent ontology term
  • 4audit script error
Audit category:
  • 14missing controlled_by
Audit category:
  • 4inconsistent control read length
assay_title!
  • single cell RNA-seq
BIOSAMPLE
ASSAY

568 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
DNase-seq
small RNA-seq
Hi-C
snATAC-seq
MeRIP-seq
FAIRE-seq
Capture-C
snDrop-seq
DNAme array
tissue
islet of Langerhans1022181224
liver2611
brain612
heart2411
frontal cortex2211
primary cell
monocyte264721
mesenchymal stem cell7
CD8-positive, alpha-beta T cell221
B cell22
T follicular helper cell22
in vitro differentiated cells
neural progenitor cell72110
embryonic stem cell51141
adipocyte1741
cardiomyocytes12
induced pluripotent stem cell9
stem cell
mesenchymal stem cell1
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