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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
10
total RNA-seq
5
STARR-seq
3
Hi-C
1
ATAC-seq
1
whole genome sequencing assay
Assay category
14
DNA binding
10
Transcription
3
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
11
transcription factor
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
32
August, 2021
2
March, 2019
Available data
14
bed narrowPeak
14
bigWig
10
tsv
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
34
Homo sapiens
Biosample type
30
cell line
4
tissue
Organ
27
liver
4
pancreas
2
kidney
Project
34
AMP
Genome assembly (visualization)
17
hg19
1
GRCh38
Lab
3568
AMP-T2D consortium
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
34
Bing Ren, UCSD
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
5
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_title!
small RNA-seq
assay_title!!
small RNA-seq
lab.title!
Kyle Gaulton, UCSD
target.investigated_as!
control
BIOSAMPLE
ASSAY
34 results
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ChIP-seq
total RNA-seq
STARR-seq
Hi-C
ATAC-seq
whole genome sequencing assay
cell line
HepG2
14
9
2
1
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
2
1
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