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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
small RNA-seq
3
Hi-C
3
pCHi-C
3
single cell RNA-seq
2
RRBS
1
FAIRE-seq
Assay category
218
DNA binding
37
DNA accessibility
20
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
86
October, 2019
30
June, 2019
28
May, 2019
16
October, 2017
14
July, 2019
12
February, 2020
3
March, 2020
2
November, 2018
1
February, 2023
Available data
239
bam
218
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
23
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
283
Homo sapiens
Biosample type
262
tissue
21
primary cell
Organ
944
pancreas
788
liver
681
connective tissue
524
epithelium
488
adipose tissue
392
heart
353
kidney
282
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
283
AMP
Genome assembly (visualization)
213
GRCh38
160
hg19
Lab
283
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
small RNA-seq
assay_title!!
small RNA-seq
BIOSAMPLE
ASSAY
283 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
Hi-C
pCHi-C
single cell RNA-seq
RRBS
FAIRE-seq
tissue
brain
20
14
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
+ See 78 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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