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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
29
ATAC-seq
19
total RNA-seq
8
snATAC-seq
4
DNase-seq
4
pCHi-C
1
RRBS
Assay category
65
DNA binding
41
DNA accessibility
19
Transcription
1
DNA methylation
Target of assay
52
transcription factor
11
RNA binding protein
10
chromatin remodeller
7
control
4
histone
4
histone modification
4
narrow histone mark
Date released
31
February, 2023
27
December, 2018
21
October, 2019
18
January, 2019
15
November, 2018
8
January, 2021
7
June, 2019
1
February, 2020
1
January, 2018
1
July, 2019
Available data
87
bed narrowPeak
67
bam
61
bigWig
60
bigBed narrowPeak
60
fastq
5
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
130
Homo sapiens
Biosample type
61
cell line
56
tissue
13
primary cell
Organ
944
pancreas
788
liver
681
connective tissue
524
epithelium
488
adipose tissue
392
heart
353
kidney
282
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
122
AMP
8
T1D
Genome assembly (visualization)
89
hg19
60
GRCh38
Lab
122
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
assay_title!
small RNA-seq
BIOSAMPLE
ASSAY
130 results
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ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
DNase-seq
pCHi-C
RRBS
cell line
GM12878
60
1
tissue
islet of Langerhans
2
1
14
4
retina
15
3
3
pigmented layer of retina
12
2
primary cell
peripheral blood mononuclear cell
8
retinal pigment epithelial cell
3
1
1
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