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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
167
DNase-seq
35
ChIP-seq
2
ATAC-seq
Assay category
169
DNA accessibility
35
DNA binding
Target of assay
35
histone
35
histone modification
20
broad histone mark
15
narrow histone mark
Date released
163
June, 2019
26
August, 2017
November, 2018
6
November, 2017
4
October, 2017
4
October, 2019
1
March, 2019
Available data
1865
bam
1733
bigWig
1060
tsv
967
bed narrowPeak
544
bigBed narrowPeak
351
fastq
238
tagAlign
204
bed broadPeak
195
bed bed3+
167
bigBed broadPeak
156
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
198
Homo sapiens
Biosample type
204
tissue
59
cell line
49
primary cell
1
in vitro differentiated cells
Organ
68
kidney
45
musculature of body
36
limb
34
brain
27
heart
18
pancreas
18
ureter
5
blood vessel
5
vasculature
4
artery
3
eye
2
adipose tissue
2
connective tissue
2
nerve
Project
204
AMP
Genome assembly (visualization)
187
hg19
182
GRCh38
Lab
202
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
1
inconsistent assembly
assay_title!
small RNA-seq
snATAC-seq
month_released!
November, 2018
BIOSAMPLE
ASSAY
204 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
12
3
kidney
13
muscle of leg
13
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