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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
217
ChIP-seq
9
WGBS
6
RRBS
5
ATAC-seq
4
DNase-seq
Assay category
217
DNA binding
15
DNA methylation
9
DNA accessibility
Target of assay
145
histone modification
144
histone
87
broad histone mark
56
narrow histone mark
40
transcription factor
32
control
6
RNA binding protein
3
chromatin remodeller
Date released
680
February, 2021
406
November, 2017
341
May, 2020
338
May, 2021
315
August, 2021
296
October, 2019
223
August, 2017
214
June, 2019
149
February, 2023
118
May, 2019
96
May, 2022
94
December, 2017
86
July, 2019
81
November, 2018
80
April, 2019
50
March, 2020
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2018
19
April, 2020
18
October, 2017
15
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2018
8
January, 2021
6
November, 2019
6
November, 2020
5
March, 2023
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
131
fastq
125
bam
122
bigWig
101
bed narrowPeak
83
tagAlign
32
bed broadPeak
31
bigBed narrowPeak
15
bigBed broadPeak
14
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
Organism
241
Homo sapiens
Biosample type
155
tissue
68
in vitro differentiated cells
18
primary cell
Organ
pancreas
126
connective tissue
58
adipose tissue
54
liver
29
epithelium
26
musculature of body
16
brain
1
spleen
Project
241
AMP
Genome assembly (visualization)
125
hg19
106
GRCh38
Lab
241
AMP-T2D consortium
Audit category:
21
missing controlled_by
Audit category:
8
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
small RNA-seq
snDrop-seq
organ_slims!
pancreas
BIOSAMPLE
ASSAY
241 results
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Clear Filters
ChIP-seq
WGBS
RRBS
ATAC-seq
DNase-seq
tissue
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
brain
15
white adipose tissue
12
+ See 6 more…
in vitro differentiated cells
adipocyte
67
1
primary cell
skeletal muscle myoblast
15
1
2
See all biosamples
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