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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
85
single cell RNA-seq
49
ATAC-seq
48
snATAC-seq
47
WGBS
5
ChIP-seq
3
Hi-C
Assay category
97
DNA accessibility
85
Transcription
47
DNA methylation
5
DNA binding
3
3D chromatin structure
Target of assay
histone
35
histone modification
20
broad histone mark
15
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
134
May, 2022
45
February, 2021
43
September, 2020
7
August, 2020
5
May, 2024
3
October, 2022
Available data
153
zippedFastqFolder
77
fastq
15
bigWig
6
tsv
5
bed narrowPeak
3
bedpe bed3+
3
cool
3
hic
Organism
237
Homo sapiens
Biosample type
232
primary cell
5
tissue
Organ
99
epithelium
99
pancreas
5
heart
Project
232
HPAP
5
AMP
Genome assembly (visualization)
15
GRCh38
3
hg19
Lab
1809
AMP-T2D consortium
232
Klaus Kaestner, Upenn
94
Kyle Gaulton, UCSD
93
Katalin Susztak, Upenn
47
KPMP
25
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
5
Patrick T. Ellinor, Broad
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
assay_title!
small RNA-seq
total RNA-seq
target.investigated_as!
histone
BIOSAMPLE
ASSAY
237 results
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Clear Filters
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
ChIP-seq
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
29
31
1
pancreatic beta cell
16
16
1
pancreatic acinar cell
4
1
tissue
left cardiac atrium
5
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