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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
ChIP-seq
4
WGBS
3
ATAC-seq
2
pCHi-C
2
total RNA-seq
1
RNA microarray
Assay category
47
DNA binding
4
DNA methylation
3
DNA accessibility
2
Transcription
Target of assay
24
histone
24
histone modification
23
control
16
broad histone mark
8
narrow histone mark
Date released
33
August, 2017
18
October, 2018
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
October, 2019
Available data
21
fastq
19
bam
tagAlign
3
bigWig
3
tsv
2
bed narrowPeak
1
bed broadPeak
1
bedpe bed3+
1
bigBed narrowPeak
Organism
58
Homo sapiens
Biosample type
58
tissue
1
in vitro differentiated cells
Organ
300
pancreas
228
epithelium
205
liver
149
kidney
125
heart
96
connective tissue
93
bone element
59
adipose tissue
55
eye
43
vasculature
41
blood vessel
33
brain
28
musculature of body
26
limb
15
blood
15
bodily fluid
12
nerve
11
artery
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
59
AMP
Genome assembly (visualization)
422
hg19
GRCh38
Lab
59
AMP-T2D consortium
assay_title!
small RNA-seq
assembly!
GRCh38
files.file_type!
tagAlign
lab.title!
Xin Sun, UCSD
BIOSAMPLE
ASSAY
59 results
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ChIP-seq
WGBS
ATAC-seq
pCHi-C
total RNA-seq
RNA microarray
tissue
subcutaneous abdominal adipose tissue
28
3
subcutaneous adipose tissue
10
1
1
omental fat pad
8
1
adipose tissue
1
1
3
1
in vitro differentiated cells
white fat cell
1
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