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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
22
ChIP-seq
22
total RNA-seq
4
Hi-C
4
pCHi-C
1
RRBS
Assay category
28
DNA accessibility
22
DNA binding
22
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
18
control
4
histone
4
histone modification
4
narrow histone mark
Date released
38
October, 2019
31
February, 2023
5
July, 2019
4
February, 2020
2
May, 2019
1
June, 2019
Available data
28
bed narrowPeak
19
bam
8
tsv
1
bed bedMethyl
1
bigBed bedMethyl
1
bigBed narrowPeak
1
bigWig
Organism
81
Homo sapiens
Biosample type
79
tissue
2
primary cell
Organ
pancreas
260
liver
230
epithelium
149
kidney
127
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
81
AMP
Genome assembly (visualization)
130
hg19
GRCh38
Lab
81
AMP-T2D consortium
assay_title!
small RNA-seq
assembly!
GRCh38
organ_slims!
pancreas
BIOSAMPLE
ASSAY
81 results
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ATAC-seq
ChIP-seq
total RNA-seq
Hi-C
pCHi-C
RRBS
tissue
islet of Langerhans
1
3
14
4
retina
15
3
pigmented layer of retina
12
2
tibial nerve
11
1
tibial artery
5
1
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primary cell
retinal pigment epithelial cell
1
1
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