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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ChIP-seq
89
total RNA-seq
5
ATAC-seq
2
DNase-seq
2
WGBS
Assay category
151
DNA binding
89
Transcription
7
DNA accessibility
2
DNA methylation
Target of assay
103
histone modification
102
histone
52
narrow histone mark
49
broad histone mark
46
transcription factor
7
RNA binding protein
3
chromatin remodeller
2
control
Date released
524
February, 2021
280
November, 2017
249
August, 2017
203
May, 2020
203
May, 2021
189
October, 2019
188
June, 2019
158
July, 2018
105
August, 2021
94
May, 2019
79
November, 2018
75
December, 2017
72
September, 2018
64
April, 2019
61
July, 2019
49
April, 2018
47
October, 2018
40
May, 2024
38
November, 2019
35
February, 2023
31
February, 2018
30
December, 2018
26
January, 2019
14
October, 2017
12
May, 2023
11
March, 2020
7
August, 2020
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
September, 2020
2
June, 2018
2
March, 2019
1
March, 2023
Available data
249
bam
249
fastq
247
bigWig
118
bed narrowPeak
89
tsv
38
bigBed narrowPeak
33
bed bed3+
19
bed broadPeak
17
tagAlign
13
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
243
Homo sapiens
Biosample type
158
tissue
49
in vitro differentiated cells
42
primary cell
Organ
152
pancreas
65
connective tissue
19
liver
17
epithelium
16
adipose tissue
Project
249
AMP
Genome assembly (visualization)
276
hg19
249
GRCh38
Lab
249
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_title!
small RNA-seq
audit.ERROR.category!
inconsistent ontology term
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
249 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
tissue
islet of Langerhans
21
89
1
liver
18
pancreas
12
white adipose tissue
12
adipose tissue
1
2
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in vitro differentiated cells
adipocyte
48
1
primary cell
skeletal muscle myoblast
13
pancreatic endocrine cell
12
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
pancreatic acinar cell
1
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