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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
896
total RNA-seq
588
ChIP-seq
177
DNase-seq
158
ATAC-seq
16
WGBS
small RNA-seq
6
single cell RNA-seq
Assay category
902
Transcription
588
DNA binding
335
DNA accessibility
16
DNA methylation
Target of assay
494
histone modification
493
histone
251
narrow histone mark
242
broad histone mark
93
transcription factor
27
RNA binding protein
3
control
3
other context
3
other post-translational modification
chromatin remodeller
Date released
452
February, 2021
163
June, 2019
162
May, 2020
161
October, 2019
158
August, 2017
116
July, 2018
92
May, 2019
64
April, 2019
64
August, 2021
57
November, 2017
45
July, 2019
45
October, 2018
40
May, 2024
39
November, 2019
38
May, 2021
35
February, 2023
34
December, 2017
22
November, 2018
14
October, 2017
12
May, 2023
9
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
March, 2019
2
September, 2017
Available data
1694
bigWig
1685
bam
901
tsv
881
bed narrowPeak
553
bigBed narrowPeak
278
fastq
204
bed bed3+
191
bed broadPeak
176
bigBed broadPeak
116
tagAlign
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
1
tagAlign bed3+
Organism
1835
Homo sapiens
Biosample type
1841
tissue
533
primary cell
436
cell line
262
in vitro differentiated cells
3
stem cell
Organ
478
connective tissue
420
adipose tissue
384
pancreas
233
liver
199
brain
190
heart
164
kidney
105
blood vessel
105
vasculature
96
limb
66
bone element
62
artery
41
musculature of body
31
nerve
18
ureter
16
spleen
8
skeleton
3
eye
1
pituitary gland
Project
1839
AMP
2
T1D
Genome assembly (visualization)
1841
GRCh38
1737
hg19
Lab
1723
AMP-T2D consortium
75
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
25
inconsistent control
4
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
small RNA-seq
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
1841 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
single cell RNA-seq
tissue
adipose tissue
382
1
2
islet of Langerhans
260
25
1
22
6
liver
147
73
2
kidney
20
13
75
bone tissue
58
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