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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
13
ChIP-seq
4
total RNA-seq
small RNA-seq
1
WGBS
Assay category
33
DNA accessibility
13
DNA binding
4
Transcription
1
DNA methylation
Target of assay
13
histone
13
histone modification
8
broad histone mark
5
narrow histone mark
Date released
41
June, 2019
5
May, 2019
3
July, 2019
2
March, 2020
Available data
51
bam
51
bigWig
46
bed narrowPeak
46
bigBed narrowPeak
33
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
4
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
51
Homo sapiens
Biosample type
41
tissue
10
primary cell
Organ
633
pancreas
563
connective tissue
528
liver
421
adipose tissue
294
epithelium
265
heart
213
brain
204
kidney
191
vasculature
blood vessel
128
artery
96
limb
66
bone element
54
blood
54
bodily fluid
51
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
51
AMP
Genome assembly (visualization)
71
hg19
51
GRCh38
Lab
51
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
assay_title!
small RNA-seq
month_released!
March, 2023
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
51 results
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DNase-seq
ChIP-seq
total RNA-seq
WGBS
tissue
muscle of leg
13
5
1
muscle of arm
17
psoas muscle
2
forelimb muscle
1
hindlimb muscle
1
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primary cell
skeletal muscle satellite cell
7
1
skeletal muscle cell
1
1
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