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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
171
ChIP-seq
32
DNase-seq
5
total RNA-seq
small RNA-seq
2
ATAC-seq
Assay category
171
DNA binding
34
DNA accessibility
5
Transcription
Target of assay
168
histone
168
histone modification
107
narrow histone mark
61
broad histone mark
3
RNA binding protein
control
3
transcription factor
Date released
78
October, 2019
63
November, 2017
30
June, 2019
25
May, 2019
7
October, 2017
5
July, 2019
2
November, 2018
Available data
208
bam
207
bigWig
201
bed narrowPeak
126
bigBed narrowPeak
82
tagAlign
46
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
15
fastq
5
tsv
1
tagAlign bed3+
Organism
210
Homo sapiens
Biosample type
199
tissue
11
primary cell
Organ
631
pancreas
562
connective tissue
527
liver
421
adipose tissue
294
epithelium
265
heart
210
brain
204
kidney
191
vasculature
187
blood vessel
128
artery
96
limb
66
bone element
54
blood
54
bodily fluid
51
musculature of body
31
nerve
28
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
210
AMP
Genome assembly (visualization)
210
GRCh38
154
hg19
Lab
210
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
assay_title!
small RNA-seq
target.investigated_as!
control
BIOSAMPLE
ASSAY
210 results
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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
tissue
brain
11
14
1
layer of hippocampus
17
angular gyrus
14
temporal lobe
13
1
caudate nucleus
12
1
+ See 73 more…
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
astrocyte of the hippocampus
1
brain pericyte
1
See all biosamples
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