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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
104
total RNA-seq
17
ChIP-seq
1
ATAC-seq
Assay category
104
Transcription
17
DNA binding
1
DNA accessibility
Target of assay
11
histone
11
histone modification
6
broad histone mark
5
narrow histone mark
5
transcription factor
1
control
Date released
83
February, 2021
12
November, 2017
8
August, 2021
5
January, 2019
5
March, 2020
4
May, 2021
4
October, 2019
1
November, 2019
Available data
517
bigWig
509
bam
400
bed narrowPeak
367
fastq
351
bigBed narrowPeak
105
tsv
59
bed broadPeak
59
bigBed broadPeak
17
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
hdf5
Organism
122
Homo sapiens
Biosample type
1007
tissue
349
primary cell
144
in vitro differentiated cells
122
cell line
Organ
56
artery
56
blood vessel
56
heart
56
vasculature
35
epithelium
34
pancreas
17
liver
8
embryo
4
kidney
Project
120
AMP
2
T1D
Genome assembly (visualization)
122
hg19
118
GRCh38
Lab
122
AMP-T2D consortium
Audit category:
37
inconsistent ontology term
Audit category:
11
inconsistent control read length
assay_title!
small RNA-seq
BIOSAMPLE
ASSAY
122 results
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total RNA-seq
ChIP-seq
ATAC-seq
cell line
smooth muscle cell of the coronary artery
52
4
EndoC_BH1
33
1
HepG2
5
12
H1-hESC
8
early embryonic cell
2
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