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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
22
DNase-seq
5
total RNA-seq
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
1
ATAC-seq
1
FAIRE-seq
Assay category
123
DNA binding
24
DNA accessibility
8
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
117
histone
117
histone modification
92
narrow histone mark
25
broad histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
78
October, 2019
25
May, 2019
20
June, 2019
15
November, 2017
13
July, 2019
6
October, 2017
2
November, 2018
1
February, 2023
Available data
155
bigWig
151
bam
141
bed narrowPeak
65
bigBed narrowPeak
43
tagAlign
37
bed broadPeak
28
bigBed broadPeak
25
bed bed3+
17
fastq
8
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
160
Homo sapiens
Biosample type
139
tissue
21
primary cell
Organ
656
pancreas
622
liver
586
connective tissue
423
adipose tissue
311
epithelium
187
heart
165
vasculature
160
brain
159
blood vessel
128
kidney
96
limb
93
artery
71
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
17
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
0
stomach
Project
160
AMP
Genome assembly (visualization)
213
GRCh38
160
hg19
Lab
160
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
assay_title!
small RNA-seq
BIOSAMPLE
ASSAY
160 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
single cell RNA-seq
RRBS
ATAC-seq
FAIRE-seq
tissue
brain
11
14
1
1
1
angular gyrus
14
temporal lobe
13
1
frontal cortex
2
1
1
superior frontal gyrus
4
+ See 66 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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